About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62282595_62290750_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62282595 - 62290750
Intron Length:
8156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTAAC
U12 Branch Point Sequence:
TTCCTCCCCACA
Flanking Amino Acid:
EIWLSRESLFSSGVKTLPHN
Intron Amino Acid Position:
533

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
70.5
33.4
Major BPS
60.6
0.26
1.1
61.4
34.2
Major PPT
78.3
0.64
0.7
72.6
25.8
Minor 5ss
36.8
-1.5
3.3
48.1
47.6
Minor BPS
42.3
-0.6
2.1
57.29
42

Associated Gene:

Gene:
TMTC1
Ensembl Gene ID:
ENSAPLG00000005055
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005235
62165643 - 62326173
160531