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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62282595_62306033_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62282595 - 62306033
Intron Length:
23439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
AATTCATTATTT
Flanking Amino Acid:
EIWLSRESLFRLYPRHASAL
Intron Amino Acid Position:
533

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
70.5
33.4
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
85.8
0.81
0.7
79.5
32.5
Minor 5ss
36.8
-1.5
3.3
48.1
47.6
Minor BPS
58.7
0.35
1.8
77.1
39.2

Associated Gene:

Gene:
TMTC1
Ensembl Gene ID:
ENSAPLG00000005055
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025033
62165643 - 62326173
160531