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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6228760_6229558_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6228760 - 6229558
Intron Length:
799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGAGCTG
5'SS Class:
major
3'SS Sequence:
TTTCTCCCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GTGATTTCAACC
Flanking Amino Acid:
LKPHAYPQWEGKTNKLFHGI
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.1
57.6
46.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
77.6
0.62
0.7
70.6
30.5
Minor 5ss
32.3
-2
3.7
46.2
49.1
Minor BPS
50.9
0.01
1.6
59.58
39.6

Associated Gene:

Gene:
PHYH
Ensembl Gene ID:
ENSAPLG00000004121
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004238
6224945 - 6234255
9311