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Intron Name: Anas_platyrhynchos_platyrhynchos_1_62306178_62313862_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

62306178 - 62313862

Intron Length:

7685

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTTGA

5'SS Class:

strong_major

3'SS Sequence:

CTCCGGTTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

ATTTCTTTTTTC

Flanking Amino Acid:

RALFNLGNLLKSQGKKEEAV

Intron Amino Acid Position:

619

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

0.9

77.8

33.2

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

74.9

0.56

0.9

67.8

37.6

Minor 5ss

41.3

-1

2.8

49.5

41.2

Minor BPS

43.1

-0.5

3.5

38.4

Associated Gene:

Gene:

TMTC1

Ensembl Gene ID:

ENSAPLG00000005055

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025033

62165643 - 62326173

160531

ENSAPLT00000005235

62165643 - 62326173

160531