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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6231275_6231367_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6231275 - 6231367
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTTCTGATGT
Flanking Amino Acid:
ELFRYCTLPEILKYVECFTG
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
82.2
0.72
0.7
77.5
24.4
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
54.7
0.23
2
80.23
41.8

Associated Gene:

Gene:
PHYH
Ensembl Gene ID:
ENSAPLG00000004121
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004238
6224945 - 6234255
9311