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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6231534_6231975_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6231534 - 6231975
Intron Length:
442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGAC
5'SS Class:
strong_major
3'SS Sequence:
TTCCGCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TCTGTCTTCACT
Flanking Amino Acid:
LVSDEDIERFRKEFIRICRK
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
69.2
35.6
Major BPS
77.5
0.68
1
79.6
33
Major PPT
82.2
0.72
0.8
76.3
32.3
Minor 5ss
35.6
-1.6
3.5
48.7
47.8
Minor BPS
61.1
0.43
1.9
78.66
44.1

Associated Gene:

Gene:
PHYH
Ensembl Gene ID:
ENSAPLG00000004121
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004238
6224945 - 6234255
9311