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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6232087_6232474_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6232087 - 6232474
Intron Length:
388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTTAA
5'SS Class:
major
3'SS Sequence:
TCCTATGTCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TTTTTCCTATGT
Flanking Amino Acid:
VTAAPQPGRFHYTLDNNVLT
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.3
32.1
Major BPS
72
0.55
1
71.8
31.4
Major PPT
74.6
0.55
0.9
72
37.6
Minor 5ss
41.7
-0.9
2.8
54.7
43.6
Minor BPS
50.9
0.11
2.2
80
42.1

Associated Gene:

Gene:
PHYH
Ensembl Gene ID:
ENSAPLG00000004121
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004238
6224945 - 6234255
9311