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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62360389_62362067_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62360389 - 62362067
Intron Length:
1679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTTGA
5'SS Class:
major
3'SS Sequence:
TTTTTTCTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGTTCTGTTATT
Flanking Amino Acid:
DGPHLSSRLLDSSSVLPTSE
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
65.9
42.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
91.1
0.92
0.6
84.9
30
Minor 5ss
37.7
-1.4
3.1
40.4
45.8
Minor BPS
49.8
0.07
2.3
76.14
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016760
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031505
62359131 - 62366796
7666