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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62360389_62362675_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62360389 - 62362675
Intron Length:
2287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTTGA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
AATTCCAGAGAA
Flanking Amino Acid:
DGPHLSSRLLEMDPFTVLGP
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
65.9
42.7
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
37.7
-1.4
3.1
40.4
45.8
Minor BPS
45
-0.3
2
59.15
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016760
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031260
62359131 - 62366796
7666