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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62362884_62363651_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62362884 - 62363651
Intron Length:
768

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCAAC
5'SS Class:
major
3'SS Sequence:
TTTCATTGTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTTTTTCATT
Flanking Amino Acid:
WVLTAAHCNFSVQMDEVVLG
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
68.4
38.7
Major BPS
100
1.24
0.5
100
0
Major PPT
82.1
0.72
0.9
80.8
36.5
Minor 5ss
32.8
-2
3.1
41.6
45.4
Minor BPS
60.5
0.41
1.7
78.3
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016760
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048538
62362571 - 62377644
15074
ENSAPLT00000031505
62359131 - 62366796
7666
ENSAPLT00000031260
62359131 - 62366796
7666