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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62363816_62365082_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62363816 - 62365082
Intron Length:
1267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGCTT
5'SS Class:
major
3'SS Sequence:
TCTTCCAACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCAAC
U12 Branch Point Sequence:
TCTTCCAACACA
Flanking Amino Acid:
LLELQKPIKPGDSAAVACLA
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
66.4
44.6
Major BPS
61.9
0.3
1.2
70.7
33.5
Major PPT
71.7
0.49
0.9
66.1
33.5
Minor 5ss
35.7
-1.6
3.7
56.5
47.7
Minor BPS
47.8
-0.1
2.3
67.8
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016760
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031260
62359131 - 62366796
7666
ENSAPLT00000048538
62362571 - 62377644
15074
ENSAPLT00000031505
62359131 - 62366796
7666