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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62366400_62377322_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62366400 - 62377322
Intron Length:
10923

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGTAAC
5'SS Class:
major
3'SS Sequence:
TCTCTGTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
TGAACAACAAAC
Flanking Amino Acid:
ARSAGAAFCMRCNSSSPANI
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
74.3
36.1
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
82.1
0.72
0.8
80.5
31.5
Minor 5ss
35.1
-1.7
2.9
41.8
39.3
Minor BPS
39.9
-0.7
2
49.74
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016760
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048538
62362571 - 62377644
15074