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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62399190_62399528_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62399190 - 62399528
Intron Length:
339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGAAGC
5'SS Class:
major
3'SS Sequence:
TTGTTTTCACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATCAG
U12 Branch Point Sequence:
TTTGTTTTCACC
Flanking Amino Acid:
VGIFESPTGTGKSLSLICGA
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
66.3
39.5
Major BPS
48.6
-0
1.7
59.7
46.7
Major PPT
80.1
0.68
0.9
74.7
40
Minor 5ss
28.9
-2.4
2.8
35.8
40.7
Minor BPS
58.2
0.24
1.8
72.92
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003984
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004138
62398926 - 62404537
5612