About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62399775_62399813_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
62399775 - 62399813
Intron Length:
39

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTGTAGAGG
5'SS Class:
weak_major
3'SS Sequence:
GTGTGAGGATCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAAAAAA
U12 Branch Point Sequence:
GAAGGGTAAAAA
Flanking Amino Acid:
VNKLKVKKCYNRRYHGSEED
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.7
0.11
1.1
48.4
41.6
Major BPS
53.6
0.09
1
59.9
32.5
Major PPT
51.4
0.03
1.2
48.1
48.1
Minor 5ss
34.1
-1.8
3.2
42.6
45
Minor BPS
33.6
-1.2
2.4
39.03
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003984
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004138
62398926 - 62404537
5612