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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62401915_62403161_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62401915 - 62403161
Intron Length:
1247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGACA
5'SS Class:
strong_major
3'SS Sequence:
GTTCTGTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
CTGATTGTAACT
Flanking Amino Acid:
ESDEEKKVASGLEEDDDDDL
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
72.3
39
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
75
0.56
0.9
73
37.3
Minor 5ss
32.1
-2
3
32.8
41.8
Minor BPS
48.6
-0
2
67.23
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003984
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004138
62398926 - 62404537
5612