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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62403211_62403737_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62403211 - 62403737
Intron Length:
527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATGA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCACTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTTCCTCACT
Flanking Amino Acid:
DDLEEEHVTKIYYCSRTHSQ
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.8
33
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
75.7
0.58
0.8
70.8
28.7
Minor 5ss
31.9
-2.1
3
38.8
46.3
Minor BPS
55.5
0.25
2.1
79.84
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003984
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004138
62398926 - 62404537
5612