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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62403846_62404399_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
62403846 - 62404399
Intron Length:
554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTGCATGCCTAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TCTCTTTGCATG
Flanking Amino Acid:
TRLVSLGSRQNLCVNEEVRR
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
77.9
36.9
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
57.4
0.17
1.1
60.3
40.4
Minor 5ss
40.5
-1.1
3.2
58.3
46.4
Minor BPS
43.4
-0.6
1.8
48.39
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003984
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004138
62398926 - 62404537
5612