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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62420150_62423171_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62420150 - 62423171
Intron Length:
3022

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TGTCCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGCCAA
U12 Branch Point Sequence:
GTCTTGCCAACC
Flanking Amino Acid:
HRMLDEKSLQEKLKYFPLCV
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
82.1
31
Major BPS
53
0.07
1.4
64.5
42.8
Major PPT
83
0.74
0.8
77
31.6
Minor 5ss
32.6
-2
3.1
42.1
45
Minor BPS
41.7
-0.6
2.4
55.52
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025853
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033584
62419717 - 62442616
22900