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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6242727_6246923_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6242727 - 6246923
Intron Length:
4197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
AGACGTTTAATG
Flanking Amino Acid:
LMHGTCPETSGGLLICLPRE
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
81.4
32.7
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
90.2
0.9
0.7
88.4
28.7
Minor 5ss
39.7
-1.2
2.9
51.2
45.7
Minor BPS
47.6
-0.3
1.8
48.73
39

Associated Gene:

Gene:
SEPHS1
Ensembl Gene ID:
ENSAPLG00000003830
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003948
6242512 - 6253835
11324