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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6247137_6248371_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6247137 - 6248371
Intron Length:
1235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGAA
5'SS Class:
strong_major
3'SS Sequence:
CCCTCTTTTGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
CCTCTTTTGAAG
Flanking Amino Acid:
MMNMARLNRTAAGLMHTFNA
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.7
33.5
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
72.7
0.51
1
73.8
28.5
Minor 5ss
27.9
-2.5
3.5
37.1
47.5
Minor BPS
47.4
-0.3
1.5
47.75
40.1

Associated Gene:

Gene:
SEPHS1
Ensembl Gene ID:
ENSAPLG00000003830
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003948
6242512 - 6253835
11324