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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6248472_6251729_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6248472 - 6251729
Intron Length:
3258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
TTTCATCCATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTTTCTTTCATC
Flanking Amino Acid:
AVAVHQWLDIPEKWNKIKLV
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
71.5
33.2
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
72.3
0.5
0.9
71.9
33.7
Minor 5ss
33.1
-1.9
2.7
40.7
39.2
Minor BPS
63.9
0.42
1.7
73.34
38.7

Associated Gene:

Gene:
SEPHS1
Ensembl Gene ID:
ENSAPLG00000003830
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003948
6242512 - 6253835
11324