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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62515068_62521898_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62515068 - 62521898
Intron Length:
6831

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGAAAC
5'SS Class:
major
3'SS Sequence:
GAATCTCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACATCAT
U12 Branch Point Sequence:
CTACCAACAACC
Flanking Amino Acid:
QKPSSPDSSPREV*
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
71.2
34.5
Major BPS
66.8
0.42
1.1
68
37.7
Major PPT
74.5
0.55
0.9
70.2
40.8
Minor 5ss
26.9
-2.6
3
33.2
42.3
Minor BPS
43.8
-0.4
2
55.87
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030922
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030518
62472632 - 62522074
49443