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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62529505_62530442_R

Intron Information:

Intron Rank:
129951
Intron Class:
major
Intron Phase:
Intron Coordinates:
62529505 - 62530442
Intron Length:
938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
TCATTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
AATCTCTCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
28.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
82.4
0.73
0.9
80.4
36.9
Minor 5ss
30.7
-2.2
3.3
40.8
45.7
Minor BPS
48
-0
1.7
65.17
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017103
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037369
62528394 - 62531629
3236