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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62541710_62545901_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62541710 - 62545901
Intron Length:
4192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTCAC
U12 Branch Point Sequence:
GCTAGCTCACCA
Flanking Amino Acid:
LYRIGLNLFNINPDKGIQFL
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1
77.8
30.1
Major BPS
61
0.28
1.1
63.1
35.8
Major PPT
86.5
0.82
0.7
84
24
Minor 5ss
35.4
-1.7
3.3
48
41.4
Minor BPS
42.7
-0.5
2.2
52.91
45

Associated Gene:

Gene:
IQSEC3
Ensembl Gene ID:
ENSAPLG00000015024
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015655
62533794 - 62568296
34503