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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62561568_62563497_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62561568 - 62563497
Intron Length:
1930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
ATCTTCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ATCTTCTTCACA
Flanking Amino Acid:
GMQFHLFENEYYPHGITLVT
Intron Amino Acid Position:
636

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
78.2
36.4
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
81.5
0.71
0.8
76.1
31.8
Minor 5ss
41.2
-1
3.1
58.3
39.3
Minor BPS
63.8
0.43
1.7
72.86
39.5

Associated Gene:

Gene:
IQSEC3
Ensembl Gene ID:
ENSAPLG00000015024
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015655
62533794 - 62568296
34503