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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62564353_62564989_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62564353 - 62564989
Intron Length:
637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTCTTTTATT
Flanking Amino Acid:
EPQSKQSSPTGKKDLGEKVS
Intron Amino Acid Position:
721

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
73.3
36.4
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
76.7
0.6
1
78.4
33.6
Minor 5ss
30.8
-2.2
3.3
41.8
45
Minor BPS
75.6
0.89
1.5
91.64
31.3

Associated Gene:

Gene:
IQSEC3
Ensembl Gene ID:
ENSAPLG00000015024
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015655
62533794 - 62568296
34503