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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62565034_62565116_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62565034 - 62565116
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CTCTTCTCACAT
Flanking Amino Acid:
GEKVSDSTVEVLINASPARL
Intron Amino Acid Position:
736

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
85
0.87
0.8
85.6
23
Major PPT
91.9
0.94
0.6
91.8
19.1
Minor 5ss
35.1
-1.7
2.7
42.8
44
Minor BPS
47
-0.1
1.9
64.47
46

Associated Gene:

Gene:
IQSEC3
Ensembl Gene ID:
ENSAPLG00000015024
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015655
62533794 - 62568296
34503