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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62581642_62582061_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62581642 - 62582061
Intron Length:
420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAA
U12 Branch Point Sequence:
TTTTCTCCAAGA
Flanking Amino Acid:
FETISISWCYGVNRFYRNIE
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
71.9
39.6
Major BPS
55.5
0.14
1.3
66.7
39.7
Major PPT
88.6
0.87
0.6
85.2
22.3
Minor 5ss
40.1
-1.1
2.8
51
45.2
Minor BPS
49.8
-0
2.1
72.2
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015310
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016060
62578145 - 62593125
14981