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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62582165_62582608_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62582165 - 62582608
Intron Length:
444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGACA
5'SS Class:
major
3'SS Sequence:
TTTGTCTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TATAACTAAACT
Flanking Amino Acid:
YLIGFSNITQGGIYVFKLFD
Intron Amino Acid Position:
375

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
65.8
39.7
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
83.2
0.75
0.8
81.4
30.6
Minor 5ss
30.8
-2.2
3.3
40.8
45.2
Minor BPS
59
0.36
1.9
79.35
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015310
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016060
62578145 - 62593125
14981