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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62582741_62585727_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62582741 - 62585727
Intron Length:
2987

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCACCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAC
U12 Branch Point Sequence:
ATATCTTTCACC
Flanking Amino Acid:
MLMMLGLDSQFCTVEGFITA
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
67.7
39.3
Major BPS
77.2
0.68
0.8
77.6
26.2
Major PPT
79.1
0.65
0.8
73.5
30
Minor 5ss
25.9
-2.8
2.9
29.3
43.4
Minor BPS
64.7
0.45
1.7
73.44
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015310
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016060
62578145 - 62593125
14981