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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62592300_62592956_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62592300 - 62592956
Intron Length:
657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGTAC
5'SS Class:
major
3'SS Sequence:
CCTTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
GAAACCTGAACT
Flanking Amino Acid:
GVWKLAPMFKGVGLAAVVLS
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
63
38.1
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
87.5
0.84
0.7
79.8
32.2
Minor 5ss
36
-1.6
3.4
49.9
46.7
Minor BPS
62.7
0.48
1.5
73.58
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015310
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016060
62578145 - 62593125
14981