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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62619221_62620286_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62619221 - 62620286
Intron Length:
1066

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGCTAT
U12 Branch Point Sequence:
CTCTGGCTATGT
Flanking Amino Acid:
WLVITPGLCLAVFLFSLIKY
Intron Amino Acid Position:
504

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.8
79.6
35.4
Major BPS
47.4
-0.1
1.5
44.2
48.3
Major PPT
75.6
0.58
0.8
72.7
32.1
Minor 5ss
34
-1.8
2.8
39.3
40.3
Minor BPS
32.5
-1.2
2.6
51.35
49

Associated Gene:

Gene:
SLC6A12
Ensembl Gene ID:
ENSAPLG00000016026
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016716
62617127 - 62640525
23399