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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62620388_62625249_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
62620388 - 62625249
Intron Length:
4862

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
GCTGTTGGTGAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
CTGACTTTATCT
Flanking Amino Acid:
FEVICIGWVYGANRFYDNIE
Intron Amino Acid Position:
470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
78.4
37.9
Major BPS
75.1
0.62
1
65.6
41
Major PPT
55.7
0.13
1.2
55.5
43.8
Minor 5ss
35.6
-1.6
2.7
43.2
43.8
Minor BPS
57.8
0.32
1.7
72.07
45.1

Associated Gene:

Gene:
SLC6A12
Ensembl Gene ID:
ENSAPLG00000016026
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016716
62617127 - 62640525
23399