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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62627503_62627609_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62627503 - 62627609
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTGTTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTCAT
U12 Branch Point Sequence:
TCATGGTCATGC
Flanking Amino Acid:
GVPIAEVAESGPGLAFIAYP
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
83.9
30.3
Major BPS
70.9
0.52
1.1
71.4
36.6
Major PPT
71.8
0.49
1.1
65.1
45.5
Minor 5ss
39.3
-1.2
3.3
57.3
47.4
Minor BPS
32.9
-1.3
2.5
42.61
44.6

Associated Gene:

Gene:
SLC6A12
Ensembl Gene ID:
ENSAPLG00000016026
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016716
62617127 - 62640525
23399