About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62627735_62628588_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62627735 - 62628588
Intron Length:
854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAACAAT
U12 Branch Point Sequence:
TCTCCTCCCACA
Flanking Amino Acid:
SYNKYTNNCYRDCFMLCFLN
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.1
38.2
Major BPS
45.9
-0.2
1.4
51.1
41
Major PPT
78.2
0.63
0.7
72.3
25.9
Minor 5ss
28.6
-2.5
3.5
38
46.8
Minor BPS
42.8
-0.5
2.1
57.53
42

Associated Gene:

Gene:
SLC6A12
Ensembl Gene ID:
ENSAPLG00000016026
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016716
62617127 - 62640525
23399