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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62633059_62633924_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
62633059 - 62633924
Intron Length:
866

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTATGTGAT
5'SS Class:
major
3'SS Sequence:
CGGACACCGGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TGTCCCCGGACA
Flanking Amino Acid:
NATSPVVEFWEKRVLGLTDG
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
67.8
37.5
Major BPS
84.4
0.85
1
84
34.5
Major PPT
51
0.02
1.1
43.7
37.7
Minor 5ss
41.7
-0.9
3.2
53.6
44.8
Minor BPS
49.7
-0
1.9
67.12
38.3

Associated Gene:

Gene:
SLC6A12
Ensembl Gene ID:
ENSAPLG00000016026
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016716
62617127 - 62640525
23399