About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62634013_62635672_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62634013 - 62635672
Intron Length:
1660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACACTTT
5'SS Class:
major
3'SS Sequence:
TTTCTTTTGGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTCAT
U12 Branch Point Sequence:
TCTGGCTCATTG
Flanking Amino Acid:
WASCNNPWNSDLCVDFLNKS
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
72.3
40
Major BPS
62
0.3
1.3
65.3
43.7
Major PPT
81.5
0.71
0.9
80.8
31.2
Minor 5ss
48.1
-0.2
3.2
73.3
43.6
Minor BPS
41.1
-0.8
2.2
46.65
46.8

Associated Gene:

Gene:
SLC6A12
Ensembl Gene ID:
ENSAPLG00000016026
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016716
62617127 - 62640525
23399