About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62635814_62636601_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62635814 - 62636601
Intron Length:
788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTCAA
U12 Branch Point Sequence:
CTTTCCTTCACA
Flanking Amino Acid:
AWRKICPIFEGLGYSAQVIE
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
79.3
31.1
Major BPS
68
0.45
1.2
71.6
36.4
Major PPT
84.7
0.78
0.7
79.5
26
Minor 5ss
28.1
-2.5
2.7
31.6
42.6
Minor BPS
75
0.78
1.7
83.03
38.2

Associated Gene:

Gene:
SLC6A12
Ensembl Gene ID:
ENSAPLG00000016026
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016716
62617127 - 62640525
23399