About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62636737_62640328_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62636737 - 62640328
Intron Length:
3592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CCCATCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
GGTTCCTGAGGC
Flanking Amino Acid:
FPYLCYKNGGGAFLIPYLIF
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
78
32.6
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
75.2
0.57
0.8
68.6
31.7
Minor 5ss
41
-1
2.7
51.5
44.9
Minor BPS
48.3
-0.1
2
61.25
43.4

Associated Gene:

Gene:
SLC6A12
Ensembl Gene ID:
ENSAPLG00000016026
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016716
62617127 - 62640525
23399