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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62641281_62647660_R

Intron Information:

Intron Rank:
129809
Intron Class:
major
Intron Phase:
Intron Coordinates:
62641281 - 62647660
Intron Length:
6380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCGCTACTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
100
1.24
0.5
100
0
Major PPT
86.8
0.83
0.7
81.6
28.7
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
47.4
-0.2
2.5
71.63
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017032
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047440
62640546 - 62647964
7419