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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62653196_62654985_R

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
62653196 - 62654985
Intron Length:
1790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAAGTCC
5'SS Class:
major
3'SS Sequence:
TCCACGCAATTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
GTCCACGCAATT
Flanking Amino Acid:
MLWDQGCAAVPPGGPRTSPT
Intron Amino Acid Position:
457

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68
0.42
1
58.6
34.8
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
53.9
0.09
1
52
37
Minor 5ss
32
-2.1
3.3
38.6
42
Minor BPS
41.9
-0.5
2.2
59.49
43.7

Associated Gene:

Gene:
SLC6A13
Ensembl Gene ID:
ENSAPLG00000016055
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023287
62652980 - 62673581
20602
ENSAPLT00000016749
62652980 - 62674098
21119