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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62654494_62655038_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
62654494 - 62655038
Intron Length:
545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTCCCTCA
5'SS Class:
weak_major
3'SS Sequence:
CTGCCCACTTGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AGCTCAC
U12 Branch Point Sequence:
GCCAGCTCACCT
Flanking Amino Acid:
WIVYKLSTIKGLVFQAEHGT
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.9
0.09
1.4
51.8
42
Major BPS
61
0.28
1.1
63.1
35.8
Major PPT
49.5
-0
1.7
59
36.9
Minor 5ss
45
-0.5
2.8
58.3
45.8
Minor BPS
41
-0.6
2.1
53.21
47.5

Associated Gene:

Gene:
SLC6A13
Ensembl Gene ID:
ENSAPLG00000016055
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048130
62654267 - 62658039
3773