About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62655196_62655600_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62655196 - 62655600
Intron Length:
405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGAGCC
5'SS Class:
major
3'SS Sequence:
TCCACCCTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTCCAC
U12 Branch Point Sequence:
GTTTCTTCCACC
Flanking Amino Acid:
WLFITPAVCMATFLFSLIKY
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
0.9
64.8
33.2
Major BPS
55.1
0.13
1.3
67.8
38.2
Major PPT
65.4
0.35
1
57.6
38.4
Minor 5ss
26.4
-2.7
3.2
31
36.4
Minor BPS
55.5
0.16
2
71.25
40.1

Associated Gene:

Gene:
SLC6A13
Ensembl Gene ID:
ENSAPLG00000016055
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048130
62654267 - 62658039
3773
ENSAPLT00000023287
62652980 - 62673581
20602
ENSAPLT00000016749
62652980 - 62674098
21119