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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62655702_62656244_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62655702 - 62656244
Intron Length:
543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATCCAT
U12 Branch Point Sequence:
CCTTCTTCCACA
Flanking Amino Acid:
FETLCIAWVYGAERFYDNIE
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.8
79.6
35.4
Major BPS
57.2
0.18
1.3
68.1
38
Major PPT
80.7
0.69
0.7
75.4
26.7
Minor 5ss
34
-1.8
2.8
39.3
40.3
Minor BPS
49.5
-0
2
62.68
44.2

Associated Gene:

Gene:
SLC6A13
Ensembl Gene ID:
ENSAPLG00000016055
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048130
62654267 - 62658039
3773
ENSAPLT00000023287
62652980 - 62673581
20602
ENSAPLT00000016749
62652980 - 62674098
21119