Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62657469_62657589_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

62657469 - 62657589

Intron Length:

121

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAGTCG

5'SS Class:

major

3'SS Sequence:

TCGCTCTCTGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTGAC

U12 Branch Point Sequence:

ATGGGCTGACAG

Flanking Amino Acid:

MVVLLGLDSQFVCVESLVTA

Intron Amino Acid Position:

273

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.1

0.69

66.4

39.9

Major BPS

49.4

-0

1.3

42.8

41.8

Major PPT

78.8

0.65

0.8

73.1

31.8

Minor 5ss

36.4

-1.5

3.3

47.6

Minor BPS

37.4

-1

2.1

39.43

43.9

Associated Gene:

Gene:

SLC6A13

Ensembl Gene ID:

ENSAPLG00000016055

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023287

62652980 - 62673581

20602

ENSAPLT00000016749

62652980 - 62674098

21119