Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62660371_62667390_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

62660371 - 62667390

Intron Length:

7020

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGACA

5'SS Class:

strong_major

3'SS Sequence:

ATCTCCCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTCAC

U12 Branch Point Sequence:

GTCTTCTCACCT

Flanking Amino Acid:

PDLSRLGDPQVWMDAGTQIF

Intron Amino Acid Position:

159

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.8

0.96

0.8

81.4

32.1

Major BPS

0.87

0.8

85.6

Major PPT

80.3

0.68

0.8

73.7

30.5

Minor 5ss

32.5

-2

3.1

40.7

45.3

Minor BPS

53.3

0.18

1.9

72.31

44.6

Associated Gene:

Gene:

SLC6A13

Ensembl Gene ID:

ENSAPLG00000016055

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023287

62652980 - 62673581

20602

ENSAPLT00000016749

62652980 - 62674098

21119