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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62670680_62673028_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62670680 - 62673028
Intron Length:
2349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TCCCTCTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAG
U12 Branch Point Sequence:
TTTTCCTTCCCT
Flanking Amino Acid:
NATSPVIEFWERRVLKISDG
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
77
33.6
Major BPS
50.8
0.02
1.5
61
37.5
Major PPT
76.6
0.6
0.9
72
32.6
Minor 5ss
36.3
-1.6
2.7
38.8
40.3
Minor BPS
49.9
0.08
3.7
91.67
38.1

Associated Gene:

Gene:
SLC6A13
Ensembl Gene ID:
ENSAPLG00000016055
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016749
62652980 - 62674098
21119