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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62673092_62673549_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
62673092 - 62673549
Intron Length:
458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGCGGAGG
5'SS Class:
major
3'SS Sequence:
TGGAGCTCCAGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACTGCAT
U12 Branch Point Sequence:
ACTGCATGGAGC
Flanking Amino Acid:
GSCNHEWNTGGANSTLNVTR
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.9
0.35
1.1
51.5
46.7
Major BPS
53.6
0.09
1.4
65.3
41.5
Major PPT
46.1
-0.2
1.7
46
41.4
Minor 5ss
24.7
-2.9
3
21.6
37.4
Minor BPS
41.5
-0.6
2
49.54
41

Associated Gene:

Gene:
SLC6A13
Ensembl Gene ID:
ENSAPLG00000016055
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016749
62652980 - 62674098
21119