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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62701156_62701430_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62701156 - 62701430
Intron Length:
275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCAC
5'SS Class:
strong_major
3'SS Sequence:
TTCGTGGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAG
U12 Branch Point Sequence:
TAGGACTAACTG
Flanking Amino Acid:
KKNSSYSLLQVLSPRTDIGV
Intron Amino Acid Position:
1355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
72.3
39.5
Major BPS
60.8
0.27
1.6
60.1
46.3
Major PPT
74.3
0.55
1
64.8
45.7
Minor 5ss
38.2
-1.3
3.1
50.1
46.5
Minor BPS
39.5
-0.9
2
40.65
44

Associated Gene:

Gene:
KDM5A
Ensembl Gene ID:
ENSAPLG00000000585
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001099
62689503 - 62736693
47191