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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62711020_62711271_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62711020 - 62711271
Intron Length:
252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGACTT
5'SS Class:
major
3'SS Sequence:
GCTATTATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATTAT
U12 Branch Point Sequence:
TGTTTCTGCATA
Flanking Amino Acid:
ALSANLNHKKDVIELRVMLE
Intron Amino Acid Position:
1040

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.3
75.5
40.6
Major BPS
72.4
0.56
1.1
63.7
42.3
Major PPT
76.4
0.59
0.9
69.1
40.6
Minor 5ss
33.3
-1.9
3.2
48.4
47.1
Minor BPS
51.8
0.05
1.9
68.42
38.2

Associated Gene:

Gene:
KDM5A
Ensembl Gene ID:
ENSAPLG00000000585
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001099
62689503 - 62736693
47191